This example is the Streptococcus pyogenes STPY1. uugacaaaac auaaacaaau aaguaaucua uaaaaugaaa gguaaguuuu uaccuaaaga 60 uaccucuaau caucagaggu cauaggaaga uuauuuugua uagaggacuu agagaagaag 120 gugagaacua acuuguuuuu cuuaaucuau guuaaaagag gagaaacuua uguuuaauga 180 caucccugua uuugauuaug aagauauuca acugauuccu aacaagugca uuauuacuag 240 ucguucacaa gcagauacaa gugugacacu cggaaaauac caguucaagc uaccaguuau 300 cccagcaaau augcaaacca uuauugauga aacaauugcu gagcaguugg caaaagaggg 360 uuauuuuuau auuaugcauc guuuugauga agauagccgc aaaccuuuua ucaaacgcau 420 gcaugaacaa ggcuugauug caucaaucuc uguugggguu aaagcuugug aauaugaauu 480 ugugaccucu uugaaagagg augcuccuga guuuaucacc auugauauug cucaugguca 540 ugcuaacagu guuauugaua ugauuaagca uaucaagacu gaauuaccag aaacauuugu 600 cauugcugga aauguuggua cgccagaagc uguacgagaa cucgaaaaug caggugcuga 660 ugcuacuaaa guaggcaucg guccaggcaa aguauguauc acuaaaguua aaaccgguuu 720 cgguacaggu gguuggcagc uagcagcacu gcgcuggugc gcaaaggcag cucguaaacc 780 uaucauugcu gaugguggga uucgcacaca uggugauauu gcuaaaucca uccgcuuugg 840 agcuaguaug gucaugauug gaucgcuuuu ugcaggacau uuugaaaguc cuggaaaaac 900 gguagaagug gauggugaaa cguuuaaaga auauuauggc ucggcgucag aauaucaaaa 960 aggcgagcau aaaaauguag aaggcaaaaa aaucuuauug ccuacaaaag gucacuuauc 1020 agauacccug accgaaaugc aacaggauuu gcaaucgucc auuucuuacg cgggugguaa 1080 agauuuagac aguuugcguc auguugauua uguuaucguc aaaaauucua uuuggaaugg 1140 ugauuccauu uaaaugauau ggaguuagcu aggaccagua aagaauuuuu uagcuuaaug 1200 cuggagaugc uuuuaucaua ucucuguagg uauugaaaaa aauaagaaac augguaaaau 1260 aguaaauuau uauaaugaau ucaauaauga cauacuuauu uaugcuguga auuggcgcag 1320 cgucucuaca agacaccuua augucuaaca auaaguaagc uuuuaggcuu gcuugguuuu 1380 uaaccuugca aagugagaaa cucuuauagu uucuggcuuu gcggcaggcu uuuucuauuu 1440 gaaucaaaag gagauuuaug caguuacuug aagaacgcau cuuaacagau ggcaauauuc 1500 uaggagagaa uauucuaaag guagauaauu uuuuaacuca ucaaguugau uaccgguuga 1560 ugaaagcaau ugguaaagug uuugcucaaa aauaugcuga ggcuggcauu acaaaagugg 1620 uuacaaucga agcuucaggu auugcaccag ccguauacgc ugcagaagca auggauguuc 1680 cuaugauuuu ugcgaaaaaa cauaaaaaca uuaccaugac agaaggcauu uugacagcag 1740 aaguuuauuc uuucacuaaa caagugacga gcacgguguc uaucgcuggu aaauuccuau 1800 cuaaagaaga caagguuuug auuauugaug acuuuuuagc uaauggucag gcagccaaag 1860 gcuugauuga gauuauuggu caagcagggg cacaagucgu cggcguuggu auugugauug 1920 agaaaucuuu ccaagauggu cgucgauuga uugaagauau gggcauugaa gugaccucau 1980 uagcccguau uaaaaacuuu gaaaauggua aucuaaacuu cuuggaggcu gacgcauaau 2040 gacacauuca acaaagcagg aacauucuca cucgcaauca gcuguccuug gcuuacagca 2100 ugugcuuucg auguaugccg gaucuauuuu aguaccaauu augaucgcag gugcuuuagg 2160 uuauuccgcu agagaguuga ccuaccugau uucgacagau auuuucaugu gugguguggc 2220 uacuuucuua caguuaaagu uaaccaagca uacgggagug ggauuaccag uuguuuuagg 2280 augugcuuuu caaucagugg caccucuauc cauuauugga gcgcaacaag guucaggugc 2340 cauguuugga gcccucauug cgucaggaau uuaugucauu uuaguggcag guauuuuuuc 2400 uaagauugcu cguuucuucc caccaauugu uacaggaucg gucauuaccg uuauuggcuu 2460 aagucucgua gguguugcua uggggaauau gggagauaac gucaaagagc cuacggcaca 2520 aagcaugaug uuaucauugu ugacgauugu cauuauucuu uuaguccaaa aauuuaccaa 2580 agguuuugug aaauccauuu ccauuuugau ugggcuugua gcgggaacuu ugguuucagc 2640 uaugauggga uuaguagaua caacuccugu uguagaggcu ucuuggauuc augugccaac 2700 cccauuuuau uuuggcaugc caacuuuuga aaucacuucu auugugauga uguguaucau 2760 cgcaacgguu ucuaugguug aaucaacagg ugucuacuua gcgcuuucag auuugacuaa 2820 ugaucaauua gaugaaaaac guuugcgcaa ugguuaucgc ucagaaggga ucgcagucuu 2880 ucucgguggg uuauuuaaca ccuucccuua cacugguuuu ucucaaaacg uuggacuugu 2940 ccaaaucuca gguauuaaaa cccgucgucc gauuuacuac gcagcaggua uccuuguggu 3000 cauuggccua cucccuaaau uuagagcaau ggcacaaaug auuccaagcc caguucuugg 3060 uggagccaug cuuguucucu uugguauggu ugcucuucaa ggaaugcaaa ugcuuaaucg 3120 uguugauuuc caaaagaacg aguauaauuu uauuauugcu gccguuucca ucucagcagg 3180 uuuaggcuuu aauggcacua aucuuuuugc cagcuuacca gagacagcuc aaauguucuu 3240 aacgaauggu auugugauug ccacuuugac aucuguuguc uuaaauuuag uuuuaaaugg 3300 caaagacaaa caagaugaau aauuaaaaaa cggcuaauug agccguuuuu ucugugauca 3360 guuuugagca aaccguuaac cccuuuuaau gauaguaugg uugaaaauag ugucucaaac 3420 cauuugacau aaggacaugg ugcuuucuug uuacuagaag accuucaaua uuaucaaagg 3480 uauuuaaaag ugugauaauc auugagcuau caagaccaaa uaaacgggua guccauaugu 3540 cacaauaaaa agaagaagga gccaugaucg uuaagcuaag cauaucuguu ucuauagggu 3600 agccugucug acgaucuaag auaugaugau acuguuuccc uuuggaugua aacugccuuu 3660 cauaaauucc agaagucaca acagagugau uguuaaccuu gaugacacca agauguugcc 3720 cacguuuagc aucugguuuu ugaaugccaa uucgaaaagu cuugucaggg cuuuucggau 3780 uagguccaug aacgcguaca uuuccaccua aauuaauaag ggcagaguca auaccaucuu 3840 caaucaggua ggccauaauc uuaucaguaa uauaaccuuu ugcuaaggcu ccuaagucua 3900 aagccauucc uacuuguugu aaaaagacag ucuguuuuuu gucaucuaua agaaccuguc 3960 uaggaucugu uagagcuaac uguugugaga uaagguuaug acuaggcacu cuagcaucuu 4020 caaauccaau ucgccaggcu ugaacaagug gcccaauggc gauauuaaga uuacuuggug 4080 uugacaagcu augagcuuua ccaauuugga uuagguuaaa uaaaucagag ugaacgcuga 4140 cggguuuaac accagccgcc ugauuaauag ccaucaauuc agaguuugaa ucauuagcug 4200 aaaaacgauu uuuguaagua uauaauaagu caaugacucu acuuaguugu uggcaagcuu 4260 ugucagauuc gaucugaaua ucaauaacug uucccauuag cuuuaauugu ugcguaacaa 4320 acauaauuag uccucuuuuu agcagaauac ccccacuaag gaguggggga aggucauuau 4380 gauuuuuguu ucauuucacc uugaggauag uaaguuccuu caggcauauc guugauaaaa 4440 acauggauau uuucuuuagg ugcuuuugca augcgugaga cuacuucggu aaccucgcga 4500 gcuaauugau uuuuuuguuc uugugagcgu cccucaaaca agucaauugu uacaaauggc 4560 auaauguuac uccuuuaugu uauugggcau cauuguaaca uaaugcugug aaaaaguaua 4620 cacuguuuuc aauggcuggg aaaacuucag ccuuuguggu aaaauaggua gaauacuaua 4680 gaaaguagga uuuuccgcuu uggcucaacu cuauuauaaa uaugggacaa ugaauucugg 4740 uaaaaccauu gaaauuuuaa aaguugcuca uaacuaugaa gaacaaggca aaccuguugu 4800 cauuaugaca agugcucuug auacacguga ugguuuuggc aucgucucaa gccguauugg 4860 uaugcgacga gaagcuaucc ccauuucaaa ugacauggau auuuucacau uuauugccca 4920 auuggaggaa aaaccuuauu guguccugau ugacgaaagc caauuuuuaa gcaagcaaaa 4980 uguuuaugau uuggcgcgug ugguggauga gcuaaauguu ccugucaugg cuuuugguuu 5040 gaaaaaugau uuccaaaaca aucuuuuuga agguucaaaa cauuugcuau uauuggccga 5100 uaagauugau gaaaucaaaa caauuugcca auacuguagu aagaaagcaa ccaugguuuu 5160 aaggacagaa aacggaaaac cugucuauga aggugaucag auacaaauug gugguaauga 5220 aacauauauc ccaguuuguc gaaaacauua uuuuaaucca gauauuuaaa agguaaucgg 5280 uuuuaaagga gauacaaaga aaaaugaaua uuuaugauca auugcaggca guugaagauc 5340 guuaugaaga guuaggugag uuacuuagug auccagaugu uguuucagau acaaagcgau 5400 uuauggaauu aucacgugaa gaaacuaaua cucgagaaac ugucacagcu uauagagaau 5460 auaagcaagu cauucaaacc auuucagaug cugaagaaau gaucaaagau gccaguggug 5520 auccugaauu agaagaaaug gcuaaagaag aacuuaaaga aucaaaagca gcuaaagaag 5580 aguaugaaga aaaauuaaaa auccuucuau uaccuaaaga uccuaacgau gauaaaaaca 5640 uuauuuuaga aauucguggu gcugcuggug gcgaugaagc agcgcuuuuu gcuggugauc 5700 uuuuaacaau guaucaaaaa uaugcugaaa cucaaggaug gcguuuugaa guuauggaau 5760 cauccguuaa ugguguuggu gguauuaaag aagugguugc caugguuucu ggucagucag 5820 uuuauucuaa gcuuaaauau gaaucaggag cucaucgugu ucaacguguc ccagugacag 5880 agagucaggg ucguguucau acuucaacug caacuguuuu gguaaugcca gaaguugaag 5940 aaguagaaua cgacauugau ccuaaagacc uucgcgucga uauuuaccac gcgucuggug 6000 cuggugguca gaaugucaau aaaguugcua cugcaguucg uaugguacac auuccuacag 6060 gaaucaaagu ugaaaugcaa gaagagcgua cucagcaaaa aaaccgugau aaagcgauga 6120 aaaucauucg ugcucguguu gcugaccauu uugcgcaaau ugcucaagau gaacaagaug 6180 cugaacguaa aucaacaguu gguacuggug aucguucaga acguauucgu acuuauaauu 6240 ucccgcaaaa ucguguaaca gaucaucgua uugguuugac acuucaaaaa uuagauacua 6300 uuuuaucugg aaaaauggau gaaguuauug augcacucgu uauguaugau cagacaaaga 6360 aauuagaauc ucucaauaac uaaugaacua ugcuacauua aucagaacuu augaagauaa 6420 acuagaacaa auagaugagg aucgcgaaaa ucucgccuau guuuuuagag aaaucaaaga 6480 auggucaagu cuagauaugu ugauucacca aaaucaagcu gugacuccug aagaugcugu 6540 ucuuuuggaa cauauuuucu guucucuaag ucagcauuua ucuccucaau auauuacagg 6600 uaaugcuuau uuucgugauu ugaagcuugc agucgacaag cguguauuaa uuccaaggcc 6660 agaaacagaa gaauuaguug acaugauuuu agcugaaaau cuugaugcac cguugaaugu 6720 uuuagauauu gguacaggua guggagcgau ugcuauuucu cucaaaaaag aaaggccuaa 6780 cuggcaagua acggcaucug auauuucuag agcugcucuu gacuuggcaa aagccaaugc 6840 ugaugcuuac cagcuugaua uaacguuuau ugaaucagau guuuuuaguc ucauuucaga 6900 aacauuugau auuauugugu caaauccucc cuacauaucc uacgaggaua aggaagaagu 6960 cagucuaaau guuuugcaau cagagccuca uuuggcacuu uuugcuaaag aaaauggcua 7020 ugcuauuuac cguaagauua uugaacaagc ugacaauuac uuaacuaagg aggggaagcu 7080 uuacuuugaa auugguuaua agcaagcuga agguauaaaa gauauguuac aagccuauuu 7140 uccucaaaga cauauacgag ccguaacgga uauauuuggc aaagaaagga uggugguugu 7200 ugauuaugga guaucuagcu aguaucauug aaucagguga ugcccuuguu uuaccaacag 7260 aaacgguuua uggucuuuuu gccaaggcuu uagaugaaaa agcaguaaau gcuguuuaug 7320 acuuaaaaca aagaccccga gauaaagcaa ugaaccuuaa uguggcugau uuuaauagua 7380 ucuuagccuu uucaaaagaa cagccgagau accucaagaa auuauaccaa gccuuuuuac 7440 cagguccguu aacgauuauu uuaaaagcua augaccaggu uccuuauugg auuaauucgg 7500 gacuuucaac gguugguuuu cgcuuaccca gucauccaau uaccgcagcu uuaauucaaa 7560 aaacaggccc uuuaauuggu ccuucugcaa acuuaucugg caaagcuagu ggucgaguuu 7620 uugaucauau uaugcaagau uuugacuuuc aaguguuugg uuaugcagau gauccuuuuc 7680 uaacagguaa ggauucaacc aucuuagacu uaucagguga gcgugcugug auuuuacguc 7740 aaggugcuau caccaaagaa gaauuauuag cuaacgugcc ugaacuucgc uuuuaagaga 7800 ggagccgcuu ggaauguuga gaccauuaag uaaaacggac uguccuaugc uacaagaaau 7860 uaaugccaaa gcccuuggcu auuuaguuuc gcuugacuug uuagaaaggc aauaugaacg 7920 auugauugag gauugccauc acuauuuuuu agcuuaugcc gacaaggaua ccaaucaauu 7980 auuaggcuau guucacgcug aacgguauga aacccuuuau gcuucugaug gucuuaaucu 8040 cuugggcuug gcuguuuuac cagccuauca gagaagggga auugggagug ccuuacuaag 8100 ggcccuggaa ucccaagcua ggcaggaagg cauugccuuu auucgccuca auucugccag 8160 ucaucguaaa gaagcgcaug cuuuuuaccg aaaccucgac uaugcagaug auaaaacaca 8220 auuacgauuc aucaaaaacu uacaaggaga ugacaaugau uuuugauaaa gguaauguug 8280 aagacuuuga uaaagagcuu ugggaugcca uucaugcuga agaagaaaga caagaacauc 8340 auaucgaauu gauugcaucu gaaaacaugg uuucaaaagc ugucauggca gcucaagguu 8400 cuguuuuaac caauaaguau gcagaaggcu auccagguaa ucgcuauuau gguggaacag 8460 aaugugugga uauugucgaa acgcuugcua uugaacgugc uaagaaacuu uucggugccg 8520 cauuugccaa uguucaagcc cauuccggaa gucaagccaa ugcagcagcu uauauggccu 8580 ugauugaggc uggugacacc guauuaggaa uggauuuggc ugcagguggu caucucacgc 8640 auggcucucc aguaaauuuu ucuggaaaaa ccuaccauuu uguggguuac ucaguagaua 8700 cugauacuga aauguuaaau uaugaggcga uuuuagaaca agcaaaggcg guccaaccaa 8760 agcuuaucgu ugcaggggcu ucggccuacu cuagaagcau ugauuuugaa aaguuucgug 8820 ccauugcuga ucacguaggu gcuuacuuaa ugguggacau ggcucacauc gcuggccuug 8880 uagcagcagg ugugcacccg aguccugucc cuuaugcgca uauugugaca ucaacaaccc 8940 auaaaaccuu acgugguccu cguggaggcu ugauauuaac caaugacgaa gcucuugcua 9000 aaaagauuaa uucggccguu uucccugguu uacaaggagg accucuggaa cacgugauug 9060 cugccaaagc gguugccuuc aaagaagccu uggauccagc cuuuaaagac uaugcacaag 9120 cuauuauuga uaauacugcg gcuauggcag caguuuuugc acaagaugau cguuuccguc 9180 ugaucucagg ugguacagau aaucaugucu uuuuaguaga ugucacuaag guuauugcua 9240 augguaaacu agcgcaaaau cuucuggaug agguuaauau uacccuuaau aaaaaugcca 9300 uuccuuuuga aaccuugucg ccauuuaaaa ccucagguau ucgcauuggu ugugcugcca 9360 uaaccagccg ugguaugggu guuaaagaga gucagaccau ugcccgucuu aucaucaaag 9420 ccuugguuaa ucaugaucaa gaaacuauuc uugaagaagu ccgucaggaa gugcgucagu 9480 uaaccgaugc cuucccacuc uauaaaaagu aaggaaucau guuagauagu uauauaaaac 9540 guauugucau ucaucaauuu ucucccaaug acacugaguu acuguuauca gaucguuuag 9600 ugagcauuac accgcgaauu gaugaauauu uccgaaaaaa auuggccaaa guguucucgg 9660 acgaagccaa acguggucag uuugaggcua auaauaccuu uuuuacaacc auuggugaug 9720 auuuguugga aacgucuguu accauugccc aguuauggaa ggaagccuuu guuauuucag 9780 aggaucaaaa aaccaaugac uuagucuuug uucaguuuga uaaggauggc gaacccuuuu 9840 uugcuuucuu gcgaauugcu uugaaagaac aguuugcuca ccuuucugac aauuaugaac 9900 auccauuuac ggugacgcag aauaaucugc cgagucccac ccagacacca gaugaagcac 9960 uagucauuaa ucucaaaucu ggucaguacu acuugauuga aaagcgugug aagcauaaug 10020 gcaguuuugc uaauuauuuu ucagaacacc ucuugaaagu uacaccugag caaucuguua 10080 aaaagucuau caaaaugaua gaacaaaccg cucaaaaaau ugcagagcau uuuaaucaag 10140 augauuuuac uuuucaguca aagaugaaau ccacucuuuu uaagcaguua gaagcagacg 10200 acguuuuauc accagaaaaa uuagcugacc aacucuuuga ugauaauuua acagcccguu 10260 uaaccuuugu ggaucaaguc aaagauguca uuccagaacc uauaaaaauu agcgauauug 10320 aacauucuag acagauaaaa aaacuagaaa aucaaaagcu aucguuauca aacgggauag 10380 aauuaacagu accaaaugcc auuuaucagg augcugaagc gguugaauuu uuguuaaaug 10440 augaugggac uuauucaauc uugauuaaaa auauagagga uauuaaaacc aaauagaugu 10500 uuagacuuuu aaagcgugcc ugcaguuuuc uucuucuuuu ugucauuuau caauccuuug 10560 uuauucauca caauguucaa cguguuuugg cauauaagcc uaugguugag aaaacauuag 10620 cagaaaauga uacaaaggca aauguagacu uagucuuagc uaugauauac accgagacaa 10680 aaggaggaga agcagauguc augcaaucca gugaaagcag uucaggacaa aaaaacucga 10740 uuacagauag ucaggccagu auugagcacg gggugaauuu acugucucau aaucuugcuc 10800 uagcugagga agcaggagua gauucuugga cggcuguuca ggccuauaau uuuggaacag 10860 cuuauauuga uuauauugcu gaacauggag gucaaaauac cguugauuua gcgacuaccu 10920 auuccaaaac cguuguggcg ccaagccuag gcaacacuag uggucaaacc uauuuuuauu 10980 accacccccu cgccuugauu ucuggaggua agcuuuauaa gaauggcggc aauaucuauu 11040 acucacgaga aguucauuuc aaucuuuauu uaauugaacu gaugagccuu uuuuagaaag 11100 uuaucaugaa acgauuacgu ccauauguga aaggguaccu aaaagaaagu aucuuagguc 11160 cucuuuuuaa auuauuagaa gcuuuauuug aauuauuagu cccuuuguua auugcuaaca 11220 ugauugauau aucgauuagu caacacaaca gccagggaau uuugaggguu guuuuaacau 11280 uauuugguuu agcaaccauu ggcuuauugc uuuccguuac agcccaguau uuuucuucga 11340 aagcagcugu ugguuuuaca agacaaauga cagaugacuu guuuaaaaaa aucauguuuu 11400 ugagcaagga ggaccaagac caucuugguu augcuagucu guuaucacga uugaccagug 11460 auaguuuuca aauucaaacu gguaucaauc aauuuuugcg ucuuuuucua agggccccua 11520 uuaucguaug uggugcuaug guaauggcuu auuggauuag uccaagucua acccuauggu 11580 uugugaugau ggugauuguc uuacuaacac uuguuuuugu uaugucacau uuauuagguc 11640 cccuuuaucu cuuaauccgc cgagaaacag aucacuuggu ucguuugacu agccaacagu 11700 uacaaggaau ccgaguaauu aaggcuuuua aucaaaccca aaaagaacuc caagcauuua 11760 agcagcaaaa uaugcucuua agucgccacc aauaucaagc ugcuacccua gccaaugucu 11820 ugaauccuau gacuuuuuua guggucaauc uuacccuguu aaucuugauu uggcaaggaa 11880 guuggcaagu agcucauaga ucgcuuaguc agggcauguu gguugcuuua auuaauuacc 11940 ucuugcagau uuuggcagaa cuuuugaaaa ugaccauguu gaugggaacc aucaaucaaa 12000 guguaacagc cgcaaaacgg auuaaucagg uguuuguuuu agcugaugaa gcgccuuugc 12060 ccuuacuuaa agaugguccu auuucaacuc aucuguugac cauccggcac uugaccuuua 12120 cuuauccagg agcagcagag ccaagucugu augauauuca guuaagugcu gaucagggag 12180 aauggauugg caucauuggu gguacuggag caggcaaaac gacuuugauu gacuugaucu 12240 gccaaacuua uucacaauau aguggugaga uuagucuuaa uuggcaagga gaagugccaa 12300 aaacacuaac cgaguggcga aaugugauug cucuuguucc ucaaaaagcu caauuauuua 12360 aaggaacgau uagaaguaac cuccuacugg gacaaucaau gccuauuagu gaugaggaac 12420 uguggcgggc ucuugaauug gcucaagcaa aagaguuugu cgcugccuua ccagaacaau 12480 uagaggcacc uguugaagcc uucggccguc auuuuucagg agggcaacgg caacgucuag 12540 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